Tutorials
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Using Metadensity in Jupyter notebooks
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   0_Example_on_test_data.ipynb

More data means more fun
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from here on, to reproduce the code in the notebooks, you need to download eCLIP data from the ENCODE project, create your dataloader and menifest!

`ENCODE <https://www.encodeproject.org/>`_ 



Starting from skipper data
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   1_Example_using_skipper_outputs

Create customized features: intronic polyadenylation, miRNA hosting genes
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   0_customize_feature_example_intronic_polyA
   0_customize_feature_example_miRNA_host_gene

Comparing 2 groups of transcripts
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   deseq_metaden

Loading precomputed data
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   Heatmap_from_precomputed_data

How to build the data needed for other species
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    parse_gencode_coords_into_data

Generalizing to other sequencing technology
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    1_Example_on_Par-CLIP-YBX1.ipynb